PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.285090.1
Common NameCsa_5G605080, LOC101205317
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 216aa    MW: 24260.5 Da    PI: 9.8353
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.285090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.81.3e-33358458
     ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                    + YkeClkNhAa++Ggha+DGCgEfmps +++ +++++l+CaACgCHRnFHRre++
  Cucsa.285090.1  3 ISYKECLKNHAAAVGGHALDGCGEFMPSITSTpTDPTSLNCAACGCHRNFHRRESD 58
                    68**************************99999********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.5E-28357IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-17358IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.0E-31556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.12556IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.606.3E-26117187IPR009057Homeodomain-like
SuperFamilySSF466894.48E-17117186IPR009057Homeodomain-like
TIGRFAMsTIGR015653.2E-24128185IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLISYKECLK NHAAAVGGHA LDGCGEFMPS ITSTPTDPTS LNCAACGCHR NFHRRESDDP  60
WPNRRYYPYR LCAPPSPRLS RIKSQSPSSP IPLPISHIPP PVQFSGAHML MALSSGAGEE  120
DELRRKERKR KRTKFSGEQK EKMQLFSEKM GWRIGKSEER LVEEFCREIG IGKRVLRVWM  180
HNNKYMGGKT EKNRASQTHS SEENGGNGNE SKQST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-181291871876ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818960.0LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004135457.11e-161PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9SEZ14e-58ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A0A0KSP21e-161A0A0A0KSP2_CUCSA; ZF-HD homeobox domain-containing protein
STRINGAT1G69600.11e-55(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.15e-45homeobox protein 30
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]